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ONTOLOGY REPORT - ANNOTATIONS

Term:endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
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Accession:GO:0000479 term browser browse the term
Definition:Endonucleolytic cleavage of a pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. Primary ribosomal RNA transcripts with three genes, in this order, are produced in the nuclei of many eukaryotic species, including S. cerevisiae.

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endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bms1 BMS1 ribosome biogenesis factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624922:173,616...209,170
Ensembl chrNW_004624922:173,652...212,107 		JBrowse link
G Rcl1 RNA terminal phosphate cyclase like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624736:9,545,580...9,609,897
Ensembl chrNW_004624736:9,545,433...9,609,887 		JBrowse link
G Sde2 SDE2 telomere maintenance homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624807:97,646...127,844
Ensembl chrNW_004624807:97,383...127,785 		JBrowse link
G Tsr1 TSR1 ribosome maturation factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624786:4,987,893...4,998,891 JBrowse link
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bop1 BOP1 ribosomal biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624735:12,562,734...12,586,544
Ensembl chrNW_004624735:12,562,997...12,585,971 		JBrowse link
G Npm1 nucleophosmin 1 ISO RGD PMID:9742256 RGD:11535027 NCBI chrNW_004624733:18,645,269...18,655,073 JBrowse link
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:303,723...310,479
Ensembl chrNW_004624756:307,444...310,553 		JBrowse link
G Fcf1 FCF1 rRNA-processing protein acts_upstream_of_or_within ISO (PMID:25190460) MGI PMID:25190460 NCBI chrNW_004624734:26,940,897...26,960,602
Ensembl chrNW_004624734:26,940,903...26,960,503 		JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624820:8,199,350...8,204,619
Ensembl chrNW_004624820:8,199,110...8,204,612 		JBrowse link
G Rcl1 RNA terminal phosphate cyclase like 1 acts_upstream_of_or_within ISO (PMID:25190460) MGI PMID:25190460 NCBI chrNW_004624736:9,545,580...9,609,897
Ensembl chrNW_004624736:9,545,433...9,609,887 		JBrowse link
G Tbl3 transducin beta like 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624913:282,883...289,523
Ensembl chrNW_004624913:282,887...289,407 		JBrowse link
G Utp23 UTP23 small subunit processome component acts_upstream_of_or_within ISO (PMID:25190460) MGI PMID:25190460 NCBI chrNW_004624763:15,040,367...15,044,532
Ensembl chrNW_004624763:15,040,390...15,044,532 		JBrowse link
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:303,723...310,479
Ensembl chrNW_004624756:307,444...310,553 		JBrowse link
G Fcf1 FCF1 rRNA-processing protein acts_upstream_of_or_within ISO (PMID:25190460) MGI PMID:25190460 NCBI chrNW_004624734:26,940,897...26,960,602
Ensembl chrNW_004624734:26,940,903...26,960,503 		JBrowse link
G Kri1 KRI1 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:2,624,413...2,633,931
Ensembl chrNW_004624828:2,624,894...2,633,889 		JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624820:8,199,350...8,204,619
Ensembl chrNW_004624820:8,199,110...8,204,612 		JBrowse link
G Rcl1 RNA terminal phosphate cyclase like 1 acts_upstream_of_or_within ISO (PMID:25190460) MGI PMID:25190460 NCBI chrNW_004624736:9,545,580...9,609,897
Ensembl chrNW_004624736:9,545,433...9,609,887 		JBrowse link
G Rpp40 ribonuclease P/MRP subunit p40 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:20,233,659...20,242,733
Ensembl chrNW_004624756:20,233,664...20,243,598 		JBrowse link
G Rps21 ribosomal protein S21 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:28,242,962...28,244,293
Ensembl chrNW_004624741:28,243,001...28,244,293 		JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624744:24,914,717...24,916,940
Ensembl chrNW_004624744:24,915,703...24,916,800 		JBrowse link
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rps21 ribosomal protein S21 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:28,242,962...28,244,293
Ensembl chrNW_004624741:28,243,001...28,244,293 		JBrowse link
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:303,723...310,479
Ensembl chrNW_004624756:307,444...310,553 		JBrowse link
G Nop9 NOP9 nucleolar protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624820:8,199,350...8,204,619
Ensembl chrNW_004624820:8,199,110...8,204,612 		JBrowse link
G Tbl3 transducin beta like 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624913:282,883...289,523
Ensembl chrNW_004624913:282,887...289,407 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15093
    metabolic process 9085
      organic substance metabolic process 8667
        macromolecule metabolic process 7258
          nucleic acid metabolic process 3987
            nucleic acid catabolic process 633
              rRNA processing 190
                endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 15
                  cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
                  endonucleolytic cleavage in 3'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0
                  endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 6
                  endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8
                  endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0
                  endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1
                  endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3
Path 2
Term Annotations click to browse term
  biological_process 15093
    metabolic process 9085
      organic substance metabolic process 8667
        organic cyclic compound metabolic process 4854
          nucleobase-containing compound metabolic process 4436
            nucleic acid metabolic process 3987
              RNA metabolic process 3474
                RNA processing 802
                  rRNA processing 190
                    endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 15
                      cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2
                      endonucleolytic cleavage in 3'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0
                      endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 6
                      endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8
                      endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 0
                      endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1
                      endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3
paths to the root